miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|89471970|gb|AM197221.1|AM197221 GGACAGATGACAAAATGGCTTCAACGGGAGAACTTACGCTCGACAGAGATGTCAACCGTGCAGTTCAGTTGCTGCAAAAT
CTACAACAGCAGCCTGGACTCCCAACACAGAAGCTGATCGCTTTACAAGCAATCTTAGAAAGTGATTTCTTCAATGCCGT
CAGGGAAGTGTATGAACATGTGCATGAGACTGTAGACATACAAGGAGATCCAGAAGTCAGAGCCAATGCTACTGCCAAGG
CCACCGTTGCAGCCTTTGCCGCCAGTGAGGGCCACGCCCATCCGCGGGTCGTTGAACTTCCCAAAACAGATGAGGGTCTT
GGTTTTAATGTGATGGGAGGAAGGGAGCAGAACTCGCCCATCTATATCTCTCGGATAATCCCTGGGGGAGTTGCCCATCG
GCATGGAGGTCTTAAGAGGGGTGACCAGCTCCTCTCTGTCAACGGCGTGTCTGTAGAGGGCGAGCAGCACGAGAAGGCGG
TGGAACTTCTGAAGTCGGCCTCGGAGAGAGTCAAGCTCGTCGTCCGATATACTCCCAAGGTGCTCGAGGAGATGGAAACA
AGATTTGATCGGCAGAGGGCAGCTCGTCGGCGACAGATGTCACCGGAATGGACACACACTACCCACCTATTGACTTTCAT
GTAGTTGTATTGGAAGCAGATTTTCATGCAATGTTCTTTGCCTAACAAACTAACAACTGGACTCTTTATTCATCGTGTGA
AGCCACCATTTACTGCTACAAGCTACCAGCTATGTATTAAAAAATGGAACCTACATTTCCCA




Most similar to sp|Q792I0|LIN7C_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
           GN=Lin7c PE=1 SV=1
          Length = 197

 Score =  241 bits (616), Expect = 3e-63
 Identities = 125/186 (67%), Positives = 143/186 (76%), Gaps = 1/186 (0%)
 Frame = +3

Query: 15  MASTGE-LTLDRDVNRAVXXXXXXXXXXXXXXXKLIALQAILESDFFNAVREVYEHVHET 191
           MA+ GE + L+RD+ RA+               KL ALQ +L+S+F NAVREVYEHV+ET
Sbjct: 1   MAALGEPVRLERDICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYET 60

Query: 192 VDIQGDPEVRXXXXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNVMGGREQNSPIYIS 371
           VDI   PEVR              SEGH+HPRVVELPKT+EGLGFN+MGG+EQNSPIYIS
Sbjct: 61  VDISSSPEVRANATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYIS 120

Query: 372 RIIPGGVAHRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKSASERVKLVVRYTPKVLEE 551
           RIIPGG+A RHGGLKRGDQLLSVNGVSVEGE HEKAVELLK+A  +VKLVVRYTPKVLEE
Sbjct: 121 RIIPGGIADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEE 180

Query: 552 METRFD 569
           ME+RF+
Sbjct: 181 MESRFE 186